AT5G39440.1
0.53594500000000000473
without_OMAT_gene
<html><body><title>AT5G39440.1</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u523944001000i/AT5G39440.1.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u523944001000i/AT5G39440.1.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u523944001000i/AT5G39440.1.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u522904401000i">AT5G29044.1</a></td><td>0.878326</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u220200001000i">AT2G02000.1</a></td><td>0.862126</td><td>GAD3 (glutamate decarboxylase 3)</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u123018001000i">AT1G30180.1</a></td><td>0.862023</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u322575001000i">AT3G25750.1</a></td><td>0.845657</td><td>F-box family protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u324366001000i">AT3G43660.1</a></td><td>0.844371</td><td>nodulin, putative</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u121780001000i">AT1G17800.1</a></td><td>0.842142</td><td>plastocyanin-like domain-containing protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u222568701000i">AT2G25687.1</a></td><td>0.840306</td><td>Encodes a defensin-like (DEFL) family protein.</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u521732001000i">AT5G17320.1</a></td><td>0.838502</td><td>HDG9 (HOMEODOMAIN GLABROUS 9)</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u126530001000i">AT1G65300.1</a></td><td>0.835134</td><td>AGL38 (AGAMOUS-LIKE 38)</td><td>OMAT1P018100</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u421616501000i">AT4G16165.1</a></td><td>0.832132</td><td>Expressed protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u223023001000i">AT2G30230.1</a></td><td>-0.717044</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u220137001000i">AT2G01370.1</a></td><td>-0.69125</td><td>DNA-binding storekeeper protein-related</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u223433001000i">AT2G34330.1</a></td><td>-0.659926</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u422366001000i">AT4G23660.1</a></td><td>-0.651215</td><td>AtPPT1 (Arabidopsis thaliana polyprenyltransferase 1)</td><td>OMAT4P106290</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u525044001000i">AT5G50440.1</a></td><td>-0.640332</td><td>MEMB12 (MEMBRIN 12)</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u421693001000i">AT4G16930.1</a></td><td>-0.615916</td><td>disease resistance protein (TIR-NBS-LRR class), putative</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u420835101000i">AT4G08351.1</a></td><td>-0.611032</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u421097006000i">AT4G10970.6</a></td><td>-0.609184</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u522308001000i">AT5G23080.1</a></td><td>-0.604179</td><td>TGH (TOUGH)</td><td>OMAT5P106740</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u520121501000i">AT5G01215.1</a></td><td>-0.603178</td><td>other RNA</td><td>-</td><td>-</td><td>OMAT5P000060</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u523944001000i/AT5G39440.1-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 1.00e-06</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>1.00e-06 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0044248</td><td>cellular catabolic process</td><td>11/200</td><td>3.05</td><td>3.03e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>3</td><td>GO:0009056</td><td>catabolic process</td><td>11/200</td><td>2.31</td><td>3.25e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0051252</td><td>regulation of RNA metabolic process</td><td>11/200</td><td>2.10</td><td>6.63e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0032774</td><td>RNA biosynthetic process</td><td>11/200</td><td>2.01</td><td>9.43e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0012505</td><td>endomembrane system</td><td>91/200</td><td>3.75</td><td>1.50e-32</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0044464</td><td>cell part</td><td>126/200</td><td>1.38</td><td>3.10e-07</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>M</td><td>3</td><td>GO:0004857</td><td>enzyme inhibitor activity</td><td>11/200</td><td>10.51</td><td>7.49e-10</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>M</td><td>5</td><td>GO:0004091</td><td>carboxylesterase activity</td><td>12/200</td><td>5.99</td><td>1.33e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0016788</td><td>hydrolase activity, acting on ester bonds</td><td>14/200</td><td>2.36</td><td>1.00e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>endomembrane</td><td>-</td><td>91/200</td><td>3.85</td><td>1.75e-33</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>system</td><td>-</td><td>91/200</td><td>3.76</td><td>1.21e-32</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>defensin</td><td>-</td><td>23/200</td><td>17.71</td><td>2.05e-23</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>secreted</td><td>-</td><td>11/200</td><td>16.33</td><td>4.19e-12</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>ipr006501</td><td>-</td><td>11/200</td><td>14.87</td><td>1.29e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>pectinesterase</td><td>-</td><td>12/200</td><td>12.79</td><td>1.33e-11</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>cysteine</td><td>-</td><td>14/200</td><td>6.36</td><td>7.35e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>pectin</td><td>-</td><td>11/200</td><td>7.26</td><td>4.79e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>inhibitor</td><td>-</td><td>15/200</td><td>5.02</td><td>6.64e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>encodes</td><td>-</td><td>52/200</td><td>2.04</td><td>1.26e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>sequence</td><td>-</td><td>15/200</td><td>3.95</td><td>1.61e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>small</td><td>-</td><td>15/200</td><td>3.72</td><td>3.40e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>similarity</td><td>-</td><td>11/200</td><td>4.57</td><td>6.25e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>enzyme</td><td>-</td><td>13/200</td><td>3.85</td><td>8.65e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>molecular</td><td>-</td><td>10/200</td><td>4.72</td><td>1.05e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>ipr001810</td><td>-</td><td>14/200</td><td>3.44</td><td>1.64e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>cyclin</td><td>-</td><td>14/200</td><td>3.00</td><td>7.98e-05</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT5G39440&keyword=cyclin">3.00E-22</a></td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>biological_process</td><td>-</td><td>84/200</td><td>1.41</td><td>9.93e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>lipid</td><td>-</td><td>10/200</td><td>2.91</td><td>7.32e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>ligase</td><td>-</td><td>10/200</td><td>2.56</td><td>2.02e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>pollen</td><td>-</td><td>17/200</td><td>1.90</td><td>3.86e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>glycosyl</td><td>-</td><td>10/200</td><td>2.35</td><td>3.96e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>hydrolase</td><td>-</td><td>14/200</td><td>1.92</td><td>6.85e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>